SLURM Cgroup Limit
SLURM cgroup limits restrict resources (CPU, memory, GPU) for jobs, causing OOM kills or throttling when exceeded.
SLURM cgroup limits restrict resources (CPU, memory, GPU) for jobs, causing OOM kills or throttling when exceeded.
- Symptom
slurmstepd: error: cgroup out of memory- Root cause
- Cgroup memory limit set lower than job memory request. Cgroup CPU quota limits job to fewer cores. Cgroup device access not configured for GPUs.
- Recommended fix
- Set cgroup memory limit to match job memory request: --mem
- How Denpex helps
- Denpex investigates SLURM Cgroup Limit using the evidence you provide or your connected workload collects. Earlier rank, host or application evidence is needed to distinguish an initiating failure from a downstream report.
What this failure is
SLURM Cgroup Limit is a Infrastructure failure seen during ML training runs. SLURM cgroup limits restrict resources (CPU, memory, GPU) for jobs, causing OOM kills or throttling when exceeded. Common tags: Slurm, Cgroup, Memory, Infrastructure.
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Why it happens (the mechanism)
Cgroup memory limit set lower than job memory request. Cgroup CPU quota limits job to fewer cores. Cgroup device access not configured for GPUs. Cgroup OOM killer triggers before system OOM killer. Taken together, these mechanisms explain why the failure is reproducible, why it tends to surface on specific workloads or scales, and why generic mitigation attempts often fall short without addressing the underlying cause.
What you'll observe
- Job is killed by cgroup OOM killer
- Training runs slower than expected due to throttling
- Job can't access all requested resources
Common symptoms and what they mean
| Symptom | Why it happens |
|---|---|
| slurmstepd: error: cgroup out of memory | Cgroup memory limit set lower than job memory request |
| Job killed with SIGKILL by cgroup | Cgroup CPU quota limits job to fewer cores |
| Resource usage reports differ from job-level limits | Cgroup device access not configured for GPUs |
Which systems are affected
- SLURM-managed GPU clusters
- Cgroup v2 enabled clusters
- Shared compute environments
How to confirm this is the problem
Use this checklist to test the hypothesis against a small reproduction. No single line proves the root cause, so preserve the preceding events and compare one variable at a time.
- ✓Reproduce the failure from a clean checkpoint/seed: the symptom must appear without warm-up state from a previous run.
- ✓Verified signal present: slurmstepd: error: cgroup out of memory
- ✓Verified signal present: Job killed with SIGKILL by cgroup
- ✓Verified signal present: Resource usage reports differ from job-level limits
- ✓A targeted fix from the "How to fix it" section eliminates or substantially reduces the symptom within one validation pass.
Root cause
- Cgroup memory limit set lower than job memory request
- Cgroup CPU quota limits job to fewer cores
- Cgroup device access not configured for GPUs
- Cgroup OOM killer triggers before system OOM killer
The fix and how to prevent it
Searchable error signature
slurmstepd: error: cgroup out of memoryUse this text as a lookup key in logs and upstream issue trackers. It is not presented as a captured customer log. Confirm the cause from your own preceding events, versions, configuration and the cited references.
The fix and the prevention pattern
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Diagnose this failure in VS Code
Select the traceback or open the failed terminal, then run Denpex locally to see the initiating rank, collateral failures, exact fix, and verification command without uploading the log.
Install the free VS Code extensionSlurm GPU errors in context
Slurm GPU failures can occur before allocation, during cgroup creation or inside the workload. The hub joins job reason, GRES, memory, node-health and distributed-launch evidence.
Compare every slurm gpu error side by sideRelated failures to investigate next
Don't just read the fix, diagnose your run
The encyclopedia tells you what went wrong. Denpex tells you what went wrong in YOUR training run. With your logs, your config, and your stack.
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