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DeepSpeed ZeRO-3 NVMe Offload Checkpoint Race (FileExistsError)

All ranks race to write into the same consolidation directory during ZeRO-3 NVMe-offload checkpoint save, so only rank 0 succeeds and the rest hit FileExistsError.

Quick answer

All ranks race to write into the same consolidation directory during ZeRO-3 NVMe-offload checkpoint save, so only rank 0 succeeds and the rest hit FileExistsError.

Symptom
FileExistsError: [Errno 17] File exists
Root cause
All ranks create/copy into the same offloaded_tensors/ directory. copytree on an existing dir raises FileExistsError. No per-rank isolation of the consolidation path.
Recommended fix
Upgrade to a DeepSpeed version using per-rank subdirectories (offloaded_tensors/rank<N>/)
How Denpex helps
Denpex investigates DeepSpeed ZeRO-3 NVMe Offload Checkpoint Race (FileExistsError) using the evidence you provide or your connected workload collects. Earlier rank, host or application evidence is needed to distinguish an initiating failure from a downstream report.
Reliability#deepspeed#zero-3#nvme-offload#checkpoint#race-condition

What this failure is

DeepSpeed ZeRO-3 NVMe Offload Checkpoint Race (FileExistsError) is a Reliability failure seen during ML training runs. All ranks race to write into the same consolidation directory during ZeRO-3 NVMe-offload checkpoint save, so only rank 0 succeeds and the rest hit FileExistsError. Common tags: Deepspeed, Zero 3, Nvme Offload, Checkpoint.

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Why it happens (the mechanism)

All ranks create/copy into the same offloaded_tensors/ directory. Copytree on an existing dir raises FileExistsError. No per-rank isolation of the consolidation path. Taken together, these mechanisms explain why the failure is reproducible, why it tends to surface on specific workloads or scales, and why generic mitigation attempts often fall short without addressing the underlying cause.

What you'll observe

  • save_checkpoint crashes with ZeRO-3 + NVMe offload
  • Only happens multi-GPU
  • Requires gather-16bit-weights on save

Common symptoms and what they mean

SymptomWhy it happens
FileExistsError: [Errno 17] File existsAll ranks create/copy into the same offloaded_tensors/ directory
Error at shutil.copytree() in the consolidation stepcopytree on an existing dir raises FileExistsError
ZeRO-3 + NVMe offload onlyNo per-rank isolation of the consolidation path

Which systems are affected

  • DeepSpeed ZeRO-3 with NVMe offload
  • stage3_gather_16bit_weights_on_model_save: true
  • Multi-GPU saves

How to confirm this is the problem

Use this checklist to test the hypothesis against a small reproduction. No single line proves the root cause, so preserve the preceding events and compare one variable at a time.

  • ✓Reproduce the failure from a clean checkpoint/seed: the symptom must appear without warm-up state from a previous run.
  • ✓Verified signal present: FileExistsError: [Errno 17] File exists
  • ✓Verified signal present: Error at shutil.copytree() in the consolidation step
  • ✓Verified signal present: ZeRO-3 + NVMe offload only
  • ✓A targeted fix from the "How to fix it" section eliminates or substantially reduces the symptom within one validation pass.

Root cause

  • All ranks create/copy into the same offloaded_tensors/ directory
  • copytree on an existing dir raises FileExistsError
  • No per-rank isolation of the consolidation path

The fix and how to prevent it

Searchable error signature

search key
FileExistsError: [Errno 17] File exists

Use this text as a lookup key in logs and upstream issue trackers. It is not presented as a captured customer log. Confirm the cause from your own preceding events, versions, configuration and the cited references.

The fix and the prevention pattern

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DeepSpeed errors in context

DeepSpeed changes when parameters, gradients and optimizer state are created, partitioned, gathered and offloaded. The hub separates ZeRO, memory, checkpoint and pipeline failures by lifecycle phase.

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