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CPU Affinity Misconfiguration

CPU affinity misconfiguration prevents DataLoader workers and training threads from using optimal CPU cores.

Quick answer

CPU affinity misconfiguration prevents DataLoader workers and training threads from using optimal CPU cores.

Root cause
Workers and main process on same cores. NUMA nodes not respected. CPU pinning not set.
Recommended fix
Set CPU affinity for workers: psutil.Process().cpu_affinity()
How Denpex helps
Denpex investigates CPU Affinity Misconfiguration using the evidence you provide or your connected workload collects. Earlier rank, host or application evidence is needed to distinguish an initiating failure from a downstream report.
Performance#cpu-affinity#numa#data-loader#performance#infrastructure

What this failure is

CPU Affinity Misconfiguration is a Performance failure seen during ML training runs. CPU affinity misconfiguration prevents DataLoader workers and training threads from using optimal CPU cores. Common tags: Cpu Affinity, Numa, Data Loader, Performance.

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Why it happens (the mechanism)

Workers and main process on same cores. NUMA nodes not respected. CPU pinning not set. Hyperthreading causes contention. Taken together, these mechanisms explain why the failure is reproducible, why it tends to surface on specific workloads or scales, and why generic mitigation attempts often fall short without addressing the underlying cause.

What you'll observe

  • DataLoader workers compete for same cores
  • Training is slower than expected
  • CPU utilization is uneven

Common symptoms and what they mean

SymptomWhy it happens
DataLoader slower than expectedWorkers and main process on same cores
num_workers doesn't helpNUMA nodes not respected
High context switch rateCPU pinning not set

Which systems are affected

  • Multi-core training servers
  • NUMA-aware systems
  • High-performance data loading

How to confirm this is the problem

Use this checklist to test the hypothesis against a small reproduction. No single line proves the root cause, so preserve the preceding events and compare one variable at a time.

  • ✓Reproduce the failure from a clean checkpoint/seed: the symptom must appear without warm-up state from a previous run.
  • ✓Verified signal present: DataLoader slower than expected
  • ✓Verified signal present: num_workers doesn't help
  • ✓Verified signal present: High context switch rate
  • ✓A targeted fix from the "How to fix it" section eliminates or substantially reduces the symptom within one validation pass.

Root cause

  • Workers and main process on same cores
  • NUMA nodes not respected
  • CPU pinning not set
  • Hyperthreading causes contention

The fix and how to prevent it

The fix and the prevention pattern

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