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Cluster Shared Storage Slow

Cluster shared storage (NFS, Lustre, GPFS) can be a major bottleneck for distributed training data loading.

Quick answer

Cluster shared storage (NFS, Lustre, GPFS) can be a major bottleneck for distributed training data loading.

Root cause
Shared storage bandwidth saturated. Too many nodes reading same files. NFS single server bottleneck.
Recommended fix
Use local NVMe for hot data, shared storage for cold
How Denpex helps
Denpex investigates Cluster Shared Storage Slow using the evidence you provide or your connected workload collects. Earlier rank, host or application evidence is needed to distinguish an initiating failure from a downstream report.
Infrastructure#storage#nfs#lustre#gpfs#iops#infrastructure

What this failure is

Cluster Shared Storage Slow is a Infrastructure failure seen during ML training runs. Cluster shared storage (NFS, Lustre, GPFS) can be a major bottleneck for distributed training data loading. Common tags: Storage, Nfs, Lustre, Gpfs.

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Why it happens (the mechanism)

Shared storage bandwidth saturated. Too many nodes reading same files. NFS single server bottleneck. Lustre stripe settings not optimized. File count too high for metadata server. Taken together, these mechanisms explain why the failure is reproducible, why it tends to surface on specific workloads or scales, and why generic mitigation attempts often fall short without addressing the underlying cause.

What you'll observe

  • Data loading is the bottleneck
  • GPUs are starving for data
  • Training is IO-bound

Common symptoms and what they mean

SymptomWhy it happens
iostat shows high await on storageShared storage bandwidth saturated
nfsstat shows slow operationsToo many nodes reading same files
Lustre stripe count not optimalNFS single server bottleneck

Which systems are affected

  • Distributed training with shared data
  • Multi-node training reading same files
  • Pretraining on ImageNet/LLM datasets

How to confirm this is the problem

Use this checklist to test the hypothesis against a small reproduction. No single line proves the root cause, so preserve the preceding events and compare one variable at a time.

  • ✓Reproduce the failure from a clean checkpoint/seed: the symptom must appear without warm-up state from a previous run.
  • ✓Verified signal present: iostat shows high await on storage
  • ✓Verified signal present: nfsstat shows slow operations
  • ✓Verified signal present: Lustre stripe count not optimal
  • ✓A targeted fix from the "How to fix it" section eliminates or substantially reduces the symptom within one validation pass.

Root cause

  • Shared storage bandwidth saturated
  • Too many nodes reading same files
  • NFS single server bottleneck
  • Lustre stripe settings not optimized
  • File count too high for metadata server

The fix and how to prevent it

The fix and the prevention pattern

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Diagnose this failure in VS Code

Select the traceback or open the failed terminal, then run Denpex locally to see the initiating rank, collateral failures, exact fix, and verification command without uploading the log.

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Don't just read the fix, diagnose your run

The encyclopedia tells you what went wrong. Denpex tells you what went wrong in YOUR training run. With your logs, your config, and your stack.