Non-Atomic Checkpoint Save Interruption
The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state.
The training process was interrupted (e.
- Symptom
RuntimeError: unpickling failed- Root cause
- The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.
- Recommended fix
- Implement atomic saving temp_path = checkpoint_path + '.tmp' torch.save(state_dict, temp_path) os.replace(temp_path, checkpoint_path) Writing to a temporary file and then renaming it ensures the final checkpoint file is only created once the write completes successfully.
- How Denpex helps
- Denpex investigates Non-Atomic Checkpoint Save Interruption using the evidence you provide or your connected workload collects. Earlier rank, host or application evidence is needed to distinguish an initiating failure from a downstream report.
What this failure is
Non-Atomic Checkpoint Save Interruption is a Storage failure seen during ML training runs. The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state. Common tags: Checkpoint Corruption.
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Why it happens (the mechanism)
The error appears during load time (`torch.load()`), making it look like a reading or parsing issue, but the actual failure occurred silently at the end of the previous training run during the write phase.
What you'll observe
- EOFError: Ran out of input
- RuntimeError: unpickling failed
Common symptoms and what they mean
| Symptom | Why it happens |
|---|---|
| Training crashes when loading a checkpoint | The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state. |
| Checkpoint file size is smaller than expected or malformed | The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state. |
Which systems are affected
- PyTorch
- Local FS
How to confirm this is the problem
Use this checklist to test the hypothesis against a small reproduction. No single line proves the root cause, so preserve the preceding events and compare one variable at a time.
- ✓Check file sizes of the corrupted checkpoint vs older checkpoints
- ✓Look for preemption or OOM signals in the logs immediately preceding the crash
Root cause
- The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state.
The fix and how to prevent it
Searchable error signature
RuntimeError: unpickling failedUse this text as a lookup key in logs and upstream issue trackers. It is not presented as a captured customer log. Confirm the cause from your own preceding events, versions, configuration and the cited references.
The fix and the prevention pattern
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Diagnose this failure in VS Code
Select the traceback or open the failed terminal, then run Denpex locally to see the initiating rank, collateral failures, exact fix, and verification command without uploading the log.
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Don't just read the fix, diagnose your run
The encyclopedia tells you what went wrong. Denpex tells you what went wrong in YOUR training run. With your logs, your config, and your stack.