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Non-Atomic Checkpoint Save Interruption

The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state.

Quick answer

The training process was interrupted (e.

Symptom
RuntimeError: unpickling failed
Root cause
The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.
Recommended fix
Implement atomic saving temp_path = checkpoint_path + '.tmp' torch.save(state_dict, temp_path) os.replace(temp_path, checkpoint_path) Writing to a temporary file and then renaming it ensures the final checkpoint file is only created once the write completes successfully.
How Denpex helps
Denpex investigates Non-Atomic Checkpoint Save Interruption using the evidence you provide or your connected workload collects. Earlier rank, host or application evidence is needed to distinguish an initiating failure from a downstream report.
Storage#Checkpoint Corruption

What this failure is

Non-Atomic Checkpoint Save Interruption is a Storage failure seen during ML training runs. The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state. Common tags: Checkpoint Corruption.

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Why it happens (the mechanism)

The error appears during load time (`torch.load()`), making it look like a reading or parsing issue, but the actual failure occurred silently at the end of the previous training run during the write phase.

What you'll observe

  • EOFError: Ran out of input
  • RuntimeError: unpickling failed

Common symptoms and what they mean

SymptomWhy it happens
Training crashes when loading a checkpointThe training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state.
Checkpoint file size is smaller than expected or malformedThe training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state.

Which systems are affected

  • PyTorch
  • Local FS

How to confirm this is the problem

Use this checklist to test the hypothesis against a small reproduction. No single line proves the root cause, so preserve the preceding events and compare one variable at a time.

  • ✓Check file sizes of the corrupted checkpoint vs older checkpoints
  • ✓Look for preemption or OOM signals in the logs immediately preceding the crash

Root cause

  • The training process was interrupted (e.g. by OOM, preemption, or crash) while PyTorch was executing `torch.save()`. Because the save operation writes directly to the destination file, the interruption leaves the file in a partially written, corrupted state.

The fix and how to prevent it

Searchable error signature

search key
RuntimeError: unpickling failed

Use this text as a lookup key in logs and upstream issue trackers. It is not presented as a captured customer log. Confirm the cause from your own preceding events, versions, configuration and the cited references.

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Don't just read the fix, diagnose your run

The encyclopedia tells you what went wrong. Denpex tells you what went wrong in YOUR training run. With your logs, your config, and your stack.