TopologyAffinityError Admission Rejection
The Kubernetes scheduler is topology-blind. It assigns the Pod to a node based on total available capacity. However, the Kubelet's Topology Manager on the node (often configured with the 'single-numa-node' policy for high-performance GPU workloads) rejects the Pod at admission time because the requested CPU, memory, and GPU resources cannot be satisfied within a single NUMA domain.
The Kubernetes scheduler is topology-blind.
- Root cause
- The Kubernetes scheduler is topology-blind. It assigns the Pod to a node based on total available capacity. However, the Kubelet's Topology Manager on the node (often configured with the 'single-numa-node' policy for high-performance GPU workloads) rejects the Pod at admission time because the requested CPU, memory, and GPU resources cannot be satisfied within a single NUMA domain.
- Recommended fix
- Adjust Resource Requests kubectl edit deployment <name> Ensure CPU, memory, and GPU requests are small enough to fit within a single NUMA node's capacity on the target hardware.
- How Denpex helps
- Denpex matches TopologyAffinityError Admission Rejection across every rank in a distributed run and reports which rank failed first, so you act on the initiating node instead of the loudest one.
What this failure is
TopologyAffinityError Admission Rejection is a Hardware failure seen during ML training runs. The Kubernetes scheduler is topology-blind. It assigns the Pod to a node based on total available capacity. However, the Kubelet's Topology Manager on the node (often configured with the 'single-numa-node' policy for high-performance GPU workloads) rejects the Pod at admission time because the requested CPU, memory, and GPU resources cannot be satisfied within a single NUMA domain. Common tags: NUMA Scheduling.
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Why it happens (the mechanism)
The cluster metrics show enough free GPUs and CPUs, leading engineers to believe it's a generic scheduling bug. Furthermore, a rejected Pod is not automatically rescheduled to a different node by default, making it look like a permanent cluster hang.
What you'll observe
- TopologyAffinityError
- Warning UnexpectedAdmissionError <unknown> kubelet Update plugin resources failed due to TopologyAffinityError
Common symptoms and what they mean
| Symptom | Why it happens |
|---|---|
| Pod is stuck in a Terminated or Pending state after being scheduled to a node. | The Kubernetes scheduler is topology-blind. It assigns the Pod to a node based on total available capacity. However, the Kubelet's Topology Manager on the node (often configured with the 'single-numa-node' policy for high-performance GPU workloads) rejects the Pod at admission time because the requested CPU, memory, and GPU resources cannot be satisfied within a single NUMA domain. |
| Deployment fails to scale up despite sufficient total cluster resources. | The Kubernetes scheduler is topology-blind. It assigns the Pod to a node based on total available capacity. However, the Kubelet's Topology Manager on the node (often configured with the 'single-numa-node' policy for high-performance GPU workloads) rejects the Pod at admission time because the requested CPU, memory, and GPU resources cannot be satisfied within a single NUMA domain. |
Which systems are affected
- Kubernetes Scheduler
- Kubelet
- Topology Manager
How to confirm this is the problem
Use this checklist to test the hypothesis against a small reproduction. No single line proves the root cause, so preserve the preceding events and compare one variable at a time.
- ✓kubectl describe pod <pod-name> | grep -i TopologyAffinityError
- ✓Check node NUMA topology using 'lscpu' and 'nvidia-smi topo -m'
- ✓Verify kubelet configuration for 'topologyManagerPolicy'
The fix and the prevention pattern
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Diagnose this failure in VS Code
Select the traceback or open the failed terminal, then run Denpex locally to see the initiating rank, collateral failures, exact fix, and verification command without uploading the log.
Install the free VS Code extensionRoot cause
- The Kubernetes scheduler is topology-blind. It assigns the Pod to a node based on total available capacity. However, the Kubelet's Topology Manager on the node (often configured with the 'single-numa-node' policy for high-performance GPU workloads) rejects the Pod at admission time because the requested CPU, memory, and GPU resources cannot be satisfied within a single NUMA domain.
The fix and how to prevent it
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References
Don't just read the fix, diagnose your run
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