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ZeRO-3 Partitioned Checkpoint Dimensionality Collapse

The parameters were partitioned across GPUs using ZeRO Stage 3, and the checkpoint saving mechanism did not consolidate them back to the universal format. The saved state_dict contains only the local shard of the root rank.

Quick answer

The parameters were partitioned across GPUs using ZeRO Stage 3, and the checkpoint saving mechanism did not consolidate them back to the universal format.

Symptom
size mismatch for *: copying a param with shape torch.Size([1]) from checkpoint, the shape in current model is torch.Size([X, Y])
Root cause
The parameters were partitioned across GPUs using ZeRO Stage 3, and the checkpoint saving mechanism did not consolidate them back to the universal format. The saved state_dict contains only the local shard of the root rank.
Recommended fix
Use the DeepSpeed universal checkpoint converter. - python ds_to_universal.py --input_dir /path --output_dir /path
How Denpex helps
Denpex investigates ZeRO-3 Partitioned Checkpoint Dimensionality Collapse using the evidence you provide or your connected workload collects. Earlier rank, host or application evidence is needed to distinguish an initiating failure from a downstream report.
Model#deepspeed#user-report

What this failure is

ZeRO-3 Partitioned Checkpoint Dimensionality Collapse is a Model failure seen during ML training runs. The parameters were partitioned across GPUs using ZeRO Stage 3, and the checkpoint saving mechanism did not consolidate them back to the universal format. The saved state_dict contains only the local shard of the root rank. Common tags: Deepspeed, User Report.

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Why it happens (the mechanism)

The user assumes the checkpoint file was corrupted during disk write or network transfer due to its small size and shape mismatch. They will often attempt to repair the file system or adjust I/O timeouts.

What you'll observe

  • Training process crashes immediately upon attempting to resume from a checkpoint.
  • Checkpoint files on disk appear abnormally small (a few kilobytes instead of gigabytes).

Common symptoms and what they mean

SymptomWhy it happens
size mismatch for *: copying a param with shape torch.Size([1]) from checkpoint, the shape in current model is torch.Size([X, Y])The parameters were partitioned across GPUs using ZeRO Stage 3, and the checkpoint saving mechanism did not consolidate them back to the universal format. The saved state_dict contains only the local shard of the root rank.
size mismatch for *: copying a param with shape torch.Size([0]) from checkpointThe parameters were partitioned across GPUs using ZeRO Stage 3, and the checkpoint saving mechanism did not consolidate them back to the universal format. The saved state_dict contains only the local shard of the root rank.

Which systems are affected

  • DeepSpeed
  • PyTorch

How to confirm this is the problem

Use this checklist to test the hypothesis against a small reproduction. No single line proves the root cause, so preserve the preceding events and compare one variable at a time.

  • ✓Check the size of the `pytorch_model.bin` files in the checkpoint directory.
  • ✓Verify the DeepSpeed configuration JSON to see if `stage3_gather_16bit_weights_on_model_save` is enabled.

Root cause

  • The parameters were partitioned across GPUs using ZeRO Stage 3, and the checkpoint saving mechanism did not consolidate them back to the universal format. The saved state_dict contains only the local shard of the root rank.

The fix and how to prevent it

Searchable error signature

search key
size mismatch for *: copying a param with shape torch.Size([1]) from checkpoint, the shape in current model is torch.Size([X, Y])
size mismatch for *: copying a param with shape torch.Size([0]) from checkpoint

Use this text as a lookup key in logs and upstream issue trackers. It is not presented as a captured customer log. Confirm the cause from your own preceding events, versions, configuration and the cited references.

The fix and the prevention pattern

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Diagnose this failure in VS Code

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DeepSpeed errors in context

DeepSpeed changes when parameters, gradients and optimizer state are created, partitioned, gathered and offloaded. The hub separates ZeRO, memory, checkpoint and pipeline failures by lifecycle phase.

Compare every deepspeed error side by side

Don't just read the fix, diagnose your run

The encyclopedia tells you what went wrong. Denpex tells you what went wrong in YOUR training run. With your logs, your config, and your stack.